Bioagens Hub

Hello, —

Welcome to your control panel. Here you have access to your sequencing and analysis tools.

Beta Access · Unlimited runs · No cost — / 50 users
System Status:
ONLINE
Storage
-- / --
Compute
Ready · 0 jobs

Quick Launch

Single-cell
Scanpy · Seurat
RNA-seq
Differential expr.
Shotgun
Kraken2 · HUMAnN3
Assembly
SPAdes · QUAST
Phylogenetics
IQ-TREE · RAxML
InterProScan
Protein domains

Platform — 10 Bioinformatics Analysis Levels

L01 2 APPS

Molecular Level

De novo assembly with SPAdes, quality control with fastp and QUAST.

VIEW APPS
L02 3 APPS

Genomic Level

Snippy, Roary, Prokka, MLST and BRIG — comparative genomics without a terminal.

VIEW APPS
L03 3 APPS

Transcriptomic Level

HISAT2, Salmon and StringTie — 3 GUIs for differential expression.

VIEW APPS
L04 2 APPS

Proteomic Level

InterProScan with 6 databases. Publication-ready visualizations.

VIEW APPS
L05 1 APP

Metabolomic Level

Metabolite analysis — peak detection, alignment and annotation.

VIEW APPS
L06 1 APP

Cellular Level

Scanpy, Seurat and CellRanger — 9 single-cell analysis stages.

VIEW APPS
L07 5 APPS

Organism Level

5 sub-apps: PopGen, selection, annotation, pharmacogenomics and phylogeny.

VIEW APPS
L08 4 APPS

Metagenomics

QIIME2, mothur, Kraken2/Bracken, HUMAnN3/MetaPhlAn4, MetagenApp y PICRUSt2 — todo con GUI.

VIEW APPS
L09 6 APPS

Ecosystem Level

6 sub-apps: ecological networks, biogeochemistry, communities, modeling, eDNA and niche.

VIEW APPS
L10 5 APPS

Systems Level

5 sub-apps: multi-omics, pathways, biological networks, metabolic modeling and simulation.

VIEW APPS